sklearn.neighbors.KernelDensity

class sklearn.neighbors.KernelDensity(bandwidth=1.0, algorithm='auto', kernel='gaussian', metric='euclidean', atol=0, rtol=0, breadth_first=True, leaf_size=40, metric_params=None)[source]

Kernel Density Estimation

Read more in the User Guide.

Parameters:
bandwidth : float

The bandwidth of the kernel.

algorithm : string

The tree algorithm to use. Valid options are [‘kd_tree’|’ball_tree’|’auto’]. Default is ‘auto’.

kernel : string

The kernel to use. Valid kernels are [‘gaussian’|’tophat’|’epanechnikov’|’exponential’|’linear’|’cosine’] Default is ‘gaussian’.

metric : string

The distance metric to use. Note that not all metrics are valid with all algorithms. Refer to the documentation of BallTree and KDTree for a description of available algorithms. Note that the normalization of the density output is correct only for the Euclidean distance metric. Default is ‘euclidean’.

atol : float

The desired absolute tolerance of the result. A larger tolerance will generally lead to faster execution. Default is 0.

rtol : float

The desired relative tolerance of the result. A larger tolerance will generally lead to faster execution. Default is 1E-8.

breadth_first : boolean

If true (default), use a breadth-first approach to the problem. Otherwise use a depth-first approach.

leaf_size : int

Specify the leaf size of the underlying tree. See BallTree or KDTree for details. Default is 40.

metric_params : dict

Additional parameters to be passed to the tree for use with the metric. For more information, see the documentation of BallTree or KDTree.

Methods

fit(X[, y, sample_weight]) Fit the Kernel Density model on the data.
get_params([deep]) Get parameters for this estimator.
sample([n_samples, random_state]) Generate random samples from the model.
score(X[, y]) Compute the total log probability density under the model.
score_samples(X) Evaluate the density model on the data.
set_params(**params) Set the parameters of this estimator.
__init__(bandwidth=1.0, algorithm='auto', kernel='gaussian', metric='euclidean', atol=0, rtol=0, breadth_first=True, leaf_size=40, metric_params=None)[source]

Initialize self. See help(type(self)) for accurate signature.

fit(X, y=None, sample_weight=None)[source]

Fit the Kernel Density model on the data.

Parameters:
X : array_like, shape (n_samples, n_features)

List of n_features-dimensional data points. Each row corresponds to a single data point.

sample_weight : array_like, shape (n_samples,), optional

List of sample weights attached to the data X.
get_params(deep=True)[source]

Get parameters for this estimator.

Parameters:
deep : boolean, optional

If True, will return the parameters for this estimator and contained subobjects that are estimators.
Returns:
params : mapping of string to any

Parameter names mapped to their values.
sample(n_samples=1, random_state=None)[source]

Generate random samples from the model.

Currently, this is implemented only for gaussian and tophat kernels.

Parameters:
n_samples : int, optional

Number of samples to generate. Defaults to 1.

random_state : int, RandomState instance or None. default to None

If int, random_state is the seed used by the random number generator; If RandomState instance, random_state is the random number generator; If None, the random number generator is the RandomState instance used by np.random.
Returns:
X : array_like, shape (n_samples, n_features)

List of samples.
score(X, y=None)[source]

Compute the total log probability density under the model.

Parameters:
X : array_like, shape (n_samples, n_features)

List of n_features-dimensional data points. Each row corresponds to a single data point.
Returns:
logprob : float

Total log-likelihood of the data in X. This is normalized to be a probability density, so the value will be low for high-dimensional data.
score_samples(X)[source]

Evaluate the density model on the data.

Parameters:
X : array_like, shape (n_samples, n_features)

An array of points to query. Last dimension should match dimension of training data (n_features).
Returns:
density : ndarray, shape (n_samples,)

The array of log(density) evaluations. These are normalized to be probability densities, so values will be low for high-dimensional data.
set_params(**params)[source]

Set the parameters of this estimator.

The method works on simple estimators as well as on nested objects (such as pipelines). The latter have parameters of the form <component>__<parameter> so that it’s possible to update each component of a nested object.

Returns:
self